| -rw-r--r-- | src/Makefile.am | 2 | ||||
| -rw-r--r-- | src/controller/callbacks/reshape.c | 2 | ||||
| -rw-r--r-- | src/db/dbconnect.sqc | 12 | ||||
| -rw-r--r-- | src/model/data/base.sqc | 2 | ||||
| -rw-r--r-- | src/model/state/state.h | 3 | ||||
| -rw-r--r-- | src/util/check_error.c | 6 | ||||
| -rw-r--r-- | src/util/check_error_db.c | 13 | ||||
| -rw-r--r-- | src/util/check_error_db.h | 9 | ||||
| -rw-r--r-- | test/distance_sanity_check/gi_227977170_78032581.png | bin | 0 -> 51161 bytes | |||
| -rw-r--r-- | test/entropy/Align2Ref.m | 24 | ||||
| -rw-r--r-- | test/entropy/CalculateEntropy.m | 15 | ||||
| -rw-r--r-- | test/entropy/CalculateProteinEntropy.m | 25 | ||||
| -rw-r--r-- | test/entropy/FastNWalign2.c | 94 | ||||
| -rw-r--r-- | test/entropy/GenomeAlignments.m | 31 | ||||
| -rw-r--r-- | test/entropy/GenomePairwiseDist.m | 98 | ||||
| -rw-r--r-- | test/entropy/RefineAlignments.m | 276 | ||||
| -rw-r--r-- | test/entropy/don_anal.m | 40 | ||||
| -rw-r--r-- | test/entropy/nwalign_mod.m | 637 |
18 files changed, 1280 insertions, 9 deletions
diff --git a/src/model/state/state.h b/src/model/state/state.h index 6e4f62e..f432017 100644 --- a/src/model/state/state.h +++ b/src/model/state/state.h | |||
| @@ -8,6 +8,7 @@ | |||
| 8 | /* | 8 | /* |
| 9 | * Buffer object identifiers. | 9 | * Buffer object identifiers. |
| 10 | */ | 10 | */ |
| 11 | #define NUM_BUFFERS 2 | ||
| 11 | #define BASE_VERTICES 0 | 12 | #define BASE_VERTICES 0 |
| 12 | #define BASE_COLORS 1 | 13 | #define BASE_COLORS 1 |
| 13 | 14 | ||
| @@ -80,7 +81,7 @@ typedef struct | |||
| 80 | /* | 81 | /* |
| 81 | * Buffer objects. | 82 | * Buffer objects. |
| 82 | */ | 83 | */ |
| 83 | unsigned int buffers[1]; | 84 | unsigned int buffers[NUM_BUFFERS]; |
| 84 | 85 | ||
| 85 | /* | 86 | /* |
| 86 | * GI Identifiers indexed by row. Storage is [rows][20]. | 87 | * GI Identifiers indexed by row. Storage is [rows][20]. |
