author | Don Pellegrino <don@drexel.edu> | 2010-01-23 23:01:44 (GMT) |
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committer | Don Pellegrino <don@drexel.edu> | 2010-01-23 23:01:44 (GMT) |
commit | 276817db439a3440a69425052e852cbefeb94417 (patch) (unidiff) | |
tree | 035df11a3e1e774ebcba126721d2869d1a42b75c | |
parent | ff28b9c88cbcb4d5f715efedbc2b2bd486d3d789 (diff) | |
download | exp007-276817db439a3440a69425052e852cbefeb94417.zip exp007-276817db439a3440a69425052e852cbefeb94417.tar.gz exp007-276817db439a3440a69425052e852cbefeb94417.tar.bz2 |
Modified to test loading BLAST scores.
-rw-r--r-- | src/aggregator.c | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/src/aggregator.c b/src/aggregator.c index 200de7d..3bb3572 100644 --- a/src/aggregator.c +++ b/src/aggregator.c | |||
@@ -4,10 +4,12 @@ | |||
4 | */ | 4 | */ |
5 | 5 | ||
6 | #include "error/check_h5_error.h" | 6 | #include "error/check_h5_error.h" |
7 | #include "load/load_blast_scores.h" | ||
7 | #include "load/load_influenza_aa_dat.h" | 8 | #include "load/load_influenza_aa_dat.h" |
8 | #include "load/load_influenza_faa.h" | 9 | #include "load/load_influenza_faa.h" |
9 | #include <stdio.h> | 10 | #include <stdio.h> |
10 | 11 | ||
12 | #define BLASTFILE "run20090807.del" | ||
11 | #define H5FILE "influenza.h5" | 13 | #define H5FILE "influenza.h5" |
12 | #define INFLUENZA_AA_DAT "/u/ac/dpellegr/Documents/exp004/genomes/INFLUENZA/influenza_aa.dat" | 14 | #define INFLUENZA_AA_DAT "/u/ac/dpellegr/Documents/exp004/genomes/INFLUENZA/influenza_aa.dat" |
13 | #define INFLUENZA_FAA "/u/ac/dpellegr/Documents/exp004/genomes/INFLUENZA/influenza.faa" | 15 | #define INFLUENZA_FAA "/u/ac/dpellegr/Documents/exp004/genomes/INFLUENZA/influenza.faa" |
@@ -38,15 +40,26 @@ main () | |||
38 | /* | 40 | /* |
39 | * Load the supplementary protein data file. | 41 | * Load the supplementary protein data file. |
40 | */ | 42 | */ |
43 | /* | ||
41 | printf ("Loading \"influenza_aa.dat\" with contents of %s.\n", | 44 | printf ("Loading \"influenza_aa.dat\" with contents of %s.\n", |
42 | INFLUENZA_AA_DAT); | 45 | INFLUENZA_AA_DAT); |
43 | load_influenza_aa_dat (file_id, INFLUENZA_AA_DAT); | 46 | load_influenza_aa_dat (file_id, INFLUENZA_AA_DAT); |
47 | */ | ||
44 | 48 | ||
45 | /* | 49 | /* |
46 | * Load the FASTA protein sequence data file. | 50 | * Load the FASTA protein sequence data file. |
47 | */ | 51 | */ |
52 | /* | ||
48 | printf ("Loading \"influenza.faa\" with contents of %s.\n", INFLUENZA_FAA); | 53 | printf ("Loading \"influenza.faa\" with contents of %s.\n", INFLUENZA_FAA); |
49 | load_influenza_faa (file_id, INFLUENZA_FAA); | 54 | load_influenza_faa (file_id, INFLUENZA_FAA); |
55 | */ | ||
56 | |||
57 | /* | ||
58 | * Load the BLAST scores. | ||
59 | */ | ||
60 | printf ("Loading \"blast\" with contents of %s.\n", | ||
61 | BLASTFILE); | ||
62 | load_blast_scores (file_id, BLASTFILE); | ||
50 | 63 | ||
51 | /* | 64 | /* |
52 | * Close the HDF5 file. | 65 | * Close the HDF5 file. |