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authorDon Pellegrino <don@drexel.edu>2010-01-23 23:01:44 (GMT)
committer Don Pellegrino <don@drexel.edu>2010-01-23 23:01:44 (GMT)
commit276817db439a3440a69425052e852cbefeb94417 (patch) (unidiff)
tree035df11a3e1e774ebcba126721d2869d1a42b75c
parentff28b9c88cbcb4d5f715efedbc2b2bd486d3d789 (diff)
downloadexp007-276817db439a3440a69425052e852cbefeb94417.zip
exp007-276817db439a3440a69425052e852cbefeb94417.tar.gz
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Modified to test loading BLAST scores.
-rw-r--r--src/aggregator.c13
1 files changed, 13 insertions, 0 deletions
diff --git a/src/aggregator.c b/src/aggregator.c
index 200de7d..3bb3572 100644
--- a/src/aggregator.c
+++ b/src/aggregator.c
@@ -4,10 +4,12 @@
4 */4 */
55
6#include "error/check_h5_error.h"6#include "error/check_h5_error.h"
7#include "load/load_blast_scores.h"
7#include "load/load_influenza_aa_dat.h"8#include "load/load_influenza_aa_dat.h"
8#include "load/load_influenza_faa.h"9#include "load/load_influenza_faa.h"
9#include <stdio.h>10#include <stdio.h>
1011
12#define BLASTFILE "run20090807.del"
11#define H5FILE "influenza.h5"13#define H5FILE "influenza.h5"
12#define INFLUENZA_AA_DAT "/u/ac/dpellegr/Documents/exp004/genomes/INFLUENZA/influenza_aa.dat"14#define INFLUENZA_AA_DAT "/u/ac/dpellegr/Documents/exp004/genomes/INFLUENZA/influenza_aa.dat"
13#define INFLUENZA_FAA "/u/ac/dpellegr/Documents/exp004/genomes/INFLUENZA/influenza.faa"15#define INFLUENZA_FAA "/u/ac/dpellegr/Documents/exp004/genomes/INFLUENZA/influenza.faa"
@@ -38,15 +40,26 @@ main ()
38 /*40 /*
39 * Load the supplementary protein data file.41 * Load the supplementary protein data file.
40 */42 */
43 /*
41 printf ("Loading \"influenza_aa.dat\" with contents of %s.\n",44 printf ("Loading \"influenza_aa.dat\" with contents of %s.\n",
42 INFLUENZA_AA_DAT);45 INFLUENZA_AA_DAT);
43 load_influenza_aa_dat (file_id, INFLUENZA_AA_DAT);46 load_influenza_aa_dat (file_id, INFLUENZA_AA_DAT);
47 */
4448
45 /*49 /*
46 * Load the FASTA protein sequence data file.50 * Load the FASTA protein sequence data file.
47 */51 */
52 /*
48 printf ("Loading \"influenza.faa\" with contents of %s.\n", INFLUENZA_FAA);53 printf ("Loading \"influenza.faa\" with contents of %s.\n", INFLUENZA_FAA);
49 load_influenza_faa (file_id, INFLUENZA_FAA);54 load_influenza_faa (file_id, INFLUENZA_FAA);
55 */
56
57 /*
58 * Load the BLAST scores.
59 */
60 printf ("Loading \"blast\" with contents of %s.\n",
61 BLASTFILE);
62 load_blast_scores (file_id, BLASTFILE);
5063
51 /*64 /*
52 * Close the HDF5 file.65 * Close the HDF5 file.

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