Cleaned up some of the documentation.

1 files changed, 3 insertions, 4 deletions

diff --git a/src/assign/assign_protein_type.c b/src/assign/assign_protein_type.c
index 3947800..9a0717b 100644
--- a/src/assign/assign_protein_type.c
+++ b/src/assign/assign_protein_type.c
@@ -42,6 +42,7 @@ assign_protein_type (hid_t file_id)
    * Make BLAST messages reportable.
    */
   ErrSetMessageLevel (SEV_WARNING);
+  ValNodePtr error_returns = NULL;
 
   /*
    * Open the BLAST sequence database.
@@ -59,8 +60,6 @@ assign_protein_type (hid_t file_id)
   options->window_size = 0;
   options->multiple_hits_only = false;
 
-  ValNodePtr error_returns = NULL;
-
   /*
    * Read the data from HDF5 influenza.faa.
    */
@@ -240,7 +239,7 @@ assign_protein_type (hid_t file_id)
           
           /*
            * A hit was found.  Record the first hit as the protein type.
-           * Skip the first 6 characters and eat the "lcl|x_".
+           * Skip the first 4 characters and eat the "lcl|".
            */
           else if (seqalign != NULL)
             {
@@ -253,7 +252,7 @@ assign_protein_type (hid_t file_id)
               new_buf[i].type[0] = target_id_buf[4];
               new_buf[i].type[1] = '\0';
               
-              // Protein Type
+              // Protein Type (Skip the underscore in the string).
               strncpy (new_buf[i].protein, &target_id_buf[6], 
                                sizeof (new_buf[i].protein));     
             }