-rw-r--r-- | src/aggregator.c | 2 | ||||
-rw-r--r-- | src/assign_protein_type.c | 7 | ||||
-rw-r--r-- | src/assign_protein_type.h | 3 | ||||
-rw-r--r-- | src/check_error.c | 2 | ||||
-rw-r--r-- | src/check_error.h | 3 | ||||
-rw-r--r-- | src/check_h5_error.c | 2 | ||||
-rw-r--r-- | src/check_h5_error.h | 2 | ||||
-rw-r--r-- | src/check_ncbi_error.c | 3 | ||||
-rw-r--r-- | src/check_ncbi_error.h | 2 | ||||
-rw-r--r-- | src/load_influenza_aa_dat.c | 259 | ||||
-rw-r--r-- | src/load_influenza_aa_dat.h | 3 | ||||
-rw-r--r-- | src/load_influenza_faa.c | 2 | ||||
-rw-r--r-- | src/load_influenza_faa.h | 3 |
13 files changed, 145 insertions, 148 deletions
diff --git a/src/assign_protein_type.c b/src/assign_protein_type.c index 643ea3f..54db84e 100644 --- a/src/assign_protein_type.c +++ b/src/assign_protein_type.c | |||
@@ -48,8 +48,8 @@ assign_protein_type (hid_t file_id) | |||
48 | * Read the sequence from the database by GI. | 48 | * Read the sequence from the database by GI. |
49 | */ | 49 | */ |
50 | Int4 sequence_number = readdb_gi2seq (seqdb, 453644, NULL); | 50 | Int4 sequence_number = readdb_gi2seq (seqdb, 453644, NULL); |
51 | BioseqPtr bsp = readdb_get_bioseq(seqdb, sequence_number); | 51 | BioseqPtr bsp = readdb_get_bioseq (seqdb, sequence_number); |
52 | 52 | ||
53 | SeqAlignPtr seqalign = BioseqBlastEngine (bsp, | 53 | SeqAlignPtr seqalign = BioseqBlastEngine (bsp, |
54 | "blastp", | 54 | "blastp", |
55 | REFDB, | 55 | REFDB, |
@@ -66,8 +66,7 @@ assign_protein_type (hid_t file_id) | |||
66 | Char target_id_buf[BUFFER_LEN + 1]; | 66 | Char target_id_buf[BUFFER_LEN + 1]; |
67 | SeqIdPtr target_id = SeqAlignId (seqalign, 1); | 67 | SeqIdPtr target_id = SeqAlignId (seqalign, 1); |
68 | SeqIdWrite (target_id, target_id_buf, PRINTID_FASTA_SHORT, BUFFER_LEN); | 68 | SeqIdWrite (target_id, target_id_buf, PRINTID_FASTA_SHORT, BUFFER_LEN); |
69 | printf ("%s\n", | 69 | printf ("%s\n", target_id_buf); |
70 | target_id_buf); | ||
71 | } | 70 | } |
72 | 71 | ||
73 | // Clean up memory for the next ieration. | 72 | // Clean up memory for the next ieration. |