-rw-r--r-- | src/aggregator.c | 10 | ||||
-rw-r--r-- | src/assign/assign_protein_type.c | 24 | ||||
-rw-r--r-- | src/error/check_h5_error.c | 2 | ||||
-rw-r--r-- | src/error/check_h5_error.h | 2 | ||||
-rw-r--r-- | src/load/load_influenza_aa_dat.c | 12 | ||||
-rw-r--r-- | src/load/load_influenza_faa.c | 12 | ||||
-rw-r--r-- | src/updator.c | 4 |
7 files changed, 35 insertions, 31 deletions
diff --git a/src/load/load_influenza_aa_dat.c b/src/load/load_influenza_aa_dat.c index b50fcab..bbd4f8b 100644 --- a/src/load/load_influenza_aa_dat.c +++ b/src/load/load_influenza_aa_dat.c | |||
@@ -5,12 +5,14 @@ | |||
5 | * todo: Handle NULL values occuring in numeric fields. | 5 | * todo: Handle NULL values occuring in numeric fields. |
6 | */ | 6 | */ |
7 | 7 | ||
8 | #define _GNU_SOURCE | ||
8 | #include "load_influenza_aa_dat.h" | 9 | #include "load_influenza_aa_dat.h" |
9 | #include "error/check_error.h" | 10 | #include "error/check_error.h" |
10 | #include "error/check_h5_error.h" | 11 | #include "error/check_h5_error.h" |
11 | #include <hdf5_hl.h> | 12 | #include <hdf5_hl.h> |
12 | #include <string.h> | 13 | #include <string.h> |
13 | #include <stdlib.h> | 14 | #include <stdlib.h> |
15 | #include <stdio.h> | ||
14 | 16 | ||
15 | #define NFIELDS (hsize_t) 11 | 17 | #define NFIELDS (hsize_t) 11 |
16 | 18 | ||
@@ -223,18 +225,18 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name) | |||
223 | herr_t status = H5TBget_table_info (file_id, "influenza_aa.dat", | 225 | herr_t status = H5TBget_table_info (file_id, "influenza_aa.dat", |
224 | &nfields, &nrecords); | 226 | &nfields, &nrecords); |
225 | if (status < 0) | 227 | if (status < 0) |
226 | check_h5_error (status, __FILE__, __LINE__); | 228 | check_h5_error (__FILE__, __LINE__); |
227 | 229 | ||
228 | status = | 230 | status = |
229 | H5TBdelete_record (file_id, "influenza_aa.dat", 0, nrecords); | 231 | H5TBdelete_record (file_id, "influenza_aa.dat", 0, nrecords); |
230 | if (status < 0) | 232 | if (status < 0) |
231 | check_h5_error (status, __FILE__, __LINE__); | 233 | check_h5_error (__FILE__, __LINE__); |
232 | 234 | ||
233 | status = | 235 | status = |
234 | H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size, | 236 | H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size, |
235 | dst_offset, dst_sizes, &p_data); | 237 | dst_offset, dst_sizes, &p_data); |
236 | if (status < 0) | 238 | if (status < 0) |
237 | check_h5_error (status, __FILE__, __LINE__); | 239 | check_h5_error (__FILE__, __LINE__); |
238 | } | 240 | } |
239 | 241 | ||
240 | /* | 242 | /* |
@@ -250,7 +252,7 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name) | |||
250 | chunk_size, fill_data, compress, | 252 | chunk_size, fill_data, compress, |
251 | &p_data); | 253 | &p_data); |
252 | if (status < 0) | 254 | if (status < 0) |
253 | check_h5_error (status, __FILE__, __LINE__); | 255 | check_h5_error (__FILE__, __LINE__); |
254 | } | 256 | } |
255 | } | 257 | } |
256 | 258 | ||
@@ -260,7 +262,7 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name) | |||
260 | H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size, | 262 | H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size, |
261 | dst_offset, dst_sizes, &p_data); | 263 | dst_offset, dst_sizes, &p_data); |
262 | if (status < 0) | 264 | if (status < 0) |
263 | check_h5_error (status, __FILE__, __LINE__); | 265 | check_h5_error (__FILE__, __LINE__); |
264 | } | 266 | } |
265 | 267 | ||
266 | if (running) | 268 | if (running) |