-rw-r--r-- | analysis/year.R | 20 | ||||
-rw-r--r-- | src/Makefile.am | 39 | ||||
-rw-r--r-- | src/aggregator.c | 6 | ||||
-rw-r--r-- | src/assign/assign_protein_type.c (renamed from src/assign_protein_type.c) | 87 | ||||
-rw-r--r-- | src/assign/assign_protein_type.h (renamed from src/assign_protein_type.h) | 0 | ||||
-rw-r--r-- | src/error/check_error.c (renamed from src/check_error.c) | 0 | ||||
-rw-r--r-- | src/error/check_error.h (renamed from src/check_error.h) | 0 | ||||
-rw-r--r-- | src/error/check_h5_error.c (renamed from src/check_h5_error.c) | 0 | ||||
-rw-r--r-- | src/error/check_h5_error.h (renamed from src/check_h5_error.h) | 0 | ||||
-rw-r--r-- | src/error/check_ncbi_error.c (renamed from src/check_ncbi_error.c) | 0 | ||||
-rw-r--r-- | src/error/check_ncbi_error.h (renamed from src/check_ncbi_error.h) | 0 | ||||
-rw-r--r-- | src/load/load_influenza_aa_dat.c (renamed from src/load_influenza_aa_dat.c) | 4 | ||||
-rw-r--r-- | src/load/load_influenza_aa_dat.h (renamed from src/load_influenza_aa_dat.h) | 0 | ||||
-rw-r--r-- | src/load/load_influenza_faa.c (renamed from src/load_influenza_faa.c) | 10 | ||||
-rw-r--r-- | src/load/load_influenza_faa.h (renamed from src/load_influenza_faa.h) | 0 | ||||
-rw-r--r-- | src/model/gi_type_data.h | 21 | ||||
-rw-r--r-- | src/model/gi_type_data_init.c | 36 | ||||
-rw-r--r-- | src/model/gi_type_data_init.h | 14 | ||||
-rw-r--r-- | src/model/sequence_data.h (renamed from src/sequence_data.h) | 5 | ||||
-rw-r--r-- | src/model/sequence_data_init.c (renamed from src/sequence_data_init.c) | 6 | ||||
-rw-r--r-- | src/model/sequence_data_init.h (renamed from src/sequence_data_init.h) | 0 | ||||
-rw-r--r-- | src/updator.c | 4 |
22 files changed, 181 insertions, 71 deletions
diff --git a/src/model/sequence_data_init.c b/src/model/sequence_data_init.c new file mode 100644 index 0000000..f6b3b1f --- a/dev/null +++ b/src/model/sequence_data_init.c | |||
@@ -0,0 +1,31 @@ | |||
1 | #include "sequence_data_init.h" | ||
2 | #include "sequence_data.h" | ||
3 | |||
4 | void | ||
5 | sequence_data_init (size_t *dst_size, size_t *dst_offset, size_t *dst_sizes, | ||
6 | hid_t *field_type) | ||
7 | { | ||
8 | *dst_size = sizeof (sequence_data); | ||
9 | |||
10 | dst_offset[0] = HOFFSET (sequence_data, gi); | ||
11 | dst_offset[1] = HOFFSET (sequence_data, gb); | ||
12 | dst_offset[2] = HOFFSET (sequence_data, description); | ||
13 | |||
14 | sequence_data dst_buf[1]; | ||
15 | |||
16 | dst_sizes[0] = sizeof (dst_buf[0].gi); | ||
17 | dst_sizes[1] = sizeof (dst_buf[0].gb); | ||
18 | dst_sizes[2] = sizeof (dst_buf[0].description); | ||
19 | |||
20 | field_type[0] = H5T_NATIVE_INT; | ||
21 | |||
22 | hid_t gb_type = H5Tcopy (H5T_C_S1); | ||
23 | H5Tset_size (gb_type, 9); | ||
24 | field_type[1] = gb_type; | ||
25 | |||
26 | hid_t description_type = H5Tcopy (H5T_C_S1); | ||
27 | H5Tset_size (description_type, 196); | ||
28 | field_type[2] = description_type; | ||
29 | |||
30 | return; | ||
31 | } | ||