-rw-r--r-- | analysis/year.R | 20 | ||||
-rw-r--r-- | src/Makefile.am | 39 | ||||
-rw-r--r-- | src/aggregator.c | 6 | ||||
-rw-r--r-- | src/assign/assign_protein_type.c (renamed from src/assign_protein_type.c) | 87 | ||||
-rw-r--r-- | src/assign/assign_protein_type.h (renamed from src/assign_protein_type.h) | 0 | ||||
-rw-r--r-- | src/error/check_error.c (renamed from src/check_error.c) | 0 | ||||
-rw-r--r-- | src/error/check_error.h (renamed from src/check_error.h) | 0 | ||||
-rw-r--r-- | src/error/check_h5_error.c (renamed from src/check_h5_error.c) | 0 | ||||
-rw-r--r-- | src/error/check_h5_error.h (renamed from src/check_h5_error.h) | 0 | ||||
-rw-r--r-- | src/error/check_ncbi_error.c (renamed from src/check_ncbi_error.c) | 0 | ||||
-rw-r--r-- | src/error/check_ncbi_error.h (renamed from src/check_ncbi_error.h) | 0 | ||||
-rw-r--r-- | src/load/load_influenza_aa_dat.c (renamed from src/load_influenza_aa_dat.c) | 4 | ||||
-rw-r--r-- | src/load/load_influenza_aa_dat.h (renamed from src/load_influenza_aa_dat.h) | 0 | ||||
-rw-r--r-- | src/load/load_influenza_faa.c (renamed from src/load_influenza_faa.c) | 10 | ||||
-rw-r--r-- | src/load/load_influenza_faa.h (renamed from src/load_influenza_faa.h) | 0 | ||||
-rw-r--r-- | src/model/gi_type_data.h | 21 | ||||
-rw-r--r-- | src/model/gi_type_data_init.c | 36 | ||||
-rw-r--r-- | src/model/gi_type_data_init.h | 14 | ||||
-rw-r--r-- | src/model/sequence_data.h (renamed from src/sequence_data.h) | 5 | ||||
-rw-r--r-- | src/model/sequence_data_init.c (renamed from src/sequence_data_init.c) | 6 | ||||
-rw-r--r-- | src/model/sequence_data_init.h (renamed from src/sequence_data_init.h) | 0 | ||||
-rw-r--r-- | src/updator.c | 4 |
22 files changed, 181 insertions, 71 deletions
diff --git a/src/model/sequence_data_init.h b/src/model/sequence_data_init.h new file mode 100644 index 0000000..c87e7e6 --- a/dev/null +++ b/src/model/sequence_data_init.h @@ -0,0 +1,14 @@ +#ifndef SEQUENCE_DATA_INIT_H +#define SEQUENCE_DATA_INIT_H + +#include <hdf5.h> + +/* + * Initialize the structures describing sequence_data. These + * descriptive structures are used by the HDF5 API. + */ +void +sequence_data_init (size_t *dst_size, size_t *dst_offset, size_t *dst_sizes, + hid_t *field_type); + +#endif // SEQUENCE_DATA_INIT_H |