-rw-r--r-- | .gitignore | 5 | ||||
-rw-r--r-- | src/Makefile.am | 10 | ||||
-rw-r--r-- | src/assign_protein_type.c | 135 | ||||
-rw-r--r-- | src/load_influenza_faa.c | 67 | ||||
-rw-r--r-- | src/sequence_data.h | 16 | ||||
-rw-r--r-- | src/sequence_data_init.c | 37 | ||||
-rw-r--r-- | src/sequence_data_init.h | 14 |
7 files changed, 188 insertions, 96 deletions
diff --git a/src/sequence_data_init.c b/src/sequence_data_init.c new file mode 100644 index 0000000..09ba189 --- a/dev/null +++ b/src/sequence_data_init.c | |||
@@ -0,0 +1,37 @@ | |||
1 | #include "sequence_data_init.h" | ||
2 | #include "sequence_data.h" | ||
3 | |||
4 | void | ||
5 | sequence_data_init (size_t *dst_size, size_t *dst_offset, size_t *dst_sizes, | ||
6 | hid_t *field_type) | ||
7 | { | ||
8 | *dst_size = sizeof (sequence_data); | ||
9 | |||
10 | dst_offset[0] = HOFFSET (sequence_data, gi); | ||
11 | dst_offset[1] = HOFFSET (sequence_data, gb); | ||
12 | dst_offset[2] = HOFFSET (sequence_data, description); | ||
13 | dst_offset[3] = HOFFSET (sequence_data, protein_type); | ||
14 | |||
15 | sequence_data dst_buf[1]; | ||
16 | |||
17 | dst_sizes[0] = sizeof (dst_buf[0].gi); | ||
18 | dst_sizes[1] = sizeof (dst_buf[0].gb); | ||
19 | dst_sizes[2] = sizeof (dst_buf[0].description); | ||
20 | dst_sizes[3] = sizeof (dst_buf[0].protein_type); | ||
21 | |||
22 | field_type[0] = H5T_NATIVE_INT; | ||
23 | |||
24 | hid_t gb_type = H5Tcopy (H5T_C_S1); | ||
25 | H5Tset_size (gb_type, 9); | ||
26 | field_type[1] = gb_type; | ||
27 | |||
28 | hid_t description_type = H5Tcopy (H5T_C_S1); | ||
29 | H5Tset_size (description_type, 196); | ||
30 | field_type[2] = description_type; | ||
31 | |||
32 | hid_t protein_type_type = H5Tcopy (H5T_C_S1); | ||
33 | H5Tset_size (protein_type_type, 7); | ||
34 | field_type[3] = protein_type_type; | ||
35 | |||
36 | return; | ||
37 | } | ||