exp007 - Influenza Data Processing

Age	Commit message (Collapse)	Author	Files	Lines
2010-01-18	Added error handling for the case where a GI record is not found in the BLAST...	Don Pellegrino	1	-16/+57

2010-01-18	Implemented updator to calculate and assign protein type values to	Don Pellegrino	7	-96/+188
	records which do not have them. This is a re-entrant process that only updates missing records and skips quickly through existing records. In addition premature termination loses at most 999 records of work since every thousand records are written back to the file and flushed to disk. Still to do is to write and flush the last set of records in the final bin under 1000. Also refactored the sequence_data structure so that it can be shared between HDF5 reading and writing operations.
2010-01-18	Beginning of implmentation to iterate through and existing HDF5 and add calcu...	Don Pellegrino	3	-14/+59

2010-01-18	Ran GNU indent to format the code as per GNU coding conventions.	Don Pellegrino	13	-148/+145

2010-01-17	Added error checking routines. Added implementation of	Don Pellegrino	12	-13/+211
	assign_protein_type tested against a single hard-coded sequence input. The next step is to iterate over all records in the HDF5 collection that don't have a type assigned and to assign a type value.
2010-01-16	Added the assign_protein_type function declaration without implementation.	Don Pellegrino	2	-0/+20