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env-cobalt.sh (
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#!/bin/bash
# This script sets environment variables for building and running the
# project on NCSA Cobalt. Note that this script should be executed
# with source env-cobalt.sh rather than ./env-cobalt.sh so that the
# exports affect the current shell.
# Building on NCSA Cobalt.
# .soft
#
# @remove +hdf4
# @remove +hdf4-4.2.1
# @remove +hdf5
# @remove +hdf5-1.6.5
#
# @remove +intel-compilers
# @remove +intel-compilers10.0
# @remove +intel-compilers10.1
# @remove +intel-c-10.1.017-f-10.1.017
# @remove +intel-c-11.1.064-f-11.1.064
#
# ...defaults...
#
# +phdf5-1.8.4
# Configure
echo "Setting CPPFLAGS."
export CPPFLAGS="\
-I$HDF5_HOME/include \
-I$NCBI_DIR/include \
-I$PETSC_DIR/$PETSC_ARCH/include"
echo CPPFLAGS=$CPPFLAGS
echo "Setting LDFLAGS."
export LDFLAGS="\
-L$HDF5_HOME/lib \
-L/usr/apps/hdf/szip/lib \
-L/usr/local/intel/10.1.017/lib \
-L$NCBI_DIR/lib \
-L$PETSC_DIR/$PETSC_ARCH/lib"
echo LDFLAGS=$LDFLAGS
echo "Setting LD_LIBRARY_PATH."
export LD_LIBRARY_PATH=\
$LD_LIBRARY_PATH:\
/usr/apps/hdf/szip/lib:\
$PETSC_DIR/$PETSC_ARCH/lib
echo LD_LIBRARY_PATH=$LD_LIBRARY_PATH
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