exp007 - Influenza Data Processing


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37

#include "sequence_data_init.h"
#include "sequence_data.h"

void
sequence_data_init (size_t *dst_size, size_t *dst_offset, size_t *dst_sizes,
		    hid_t *field_type)
{
  *dst_size = sizeof (sequence_data);

  dst_offset[0] = HOFFSET (sequence_data, gi);
  dst_offset[1] = HOFFSET (sequence_data, gb);
  dst_offset[2] = HOFFSET (sequence_data, description);
  dst_offset[3] = HOFFSET (sequence_data, protein_type);

  sequence_data dst_buf[1];

  dst_sizes[0] = sizeof (dst_buf[0].gi);
  dst_sizes[1] = sizeof (dst_buf[0].gb);
  dst_sizes[2] = sizeof (dst_buf[0].description);
  dst_sizes[3] = sizeof (dst_buf[0].protein_type);

  field_type[0] = H5T_NATIVE_INT;

  hid_t gb_type = H5Tcopy (H5T_C_S1);
  H5Tset_size (gb_type, 9);
  field_type[1] = gb_type;

  hid_t description_type = H5Tcopy (H5T_C_S1);
  H5Tset_size (description_type, 196);
  field_type[2] = description_type;

  hid_t protein_type_type = H5Tcopy (H5T_C_S1);
  H5Tset_size (protein_type_type, 7);
  field_type[3] = protein_type_type;

  return;
}